PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BL_0D4DBDD0C.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 361aa    MW: 40481.8 Da    PI: 7.4741
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BL_0D4DBDD0C.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-073554626
                           -SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH  6 CrffartGtCkyGdrCkFaHg 26
                           C  f+++G C+yG+rC++ H+
  Traes_6BL_0D4DBDD0C.1 35 CT-FYQNGVCSYGSRCRYEHV 54
                           66.6666***********997 PP

2zf-CCCH24.93.5e-08141162426
                            ---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                            ++C+ fa+ GtC+yG +C+ +Hg
  Traes_6BL_0D4DBDD0C.1 141 PICS-FAAAGTCPYGKKCPQMHG 162
                            5788.*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.943128IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-4227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-7526IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4529IPR000571Zinc finger, CCCH-type
PfamPF146080.0022625No hitNo description
PROSITE profilePS5010314.0332956IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-43055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-53153IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-53453IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-53554IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.836137164IPR000571Zinc finger, CCCH-type
SMARTSM003560.01138163IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-5142162IPR000571Zinc finger, CCCH-type
SuperFamilySSF578509.32E-15191270No hitNo description
Gene3DG3DSA:3.30.40.102.0E-11199265IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001627.39E-4205266No hitNo description
SMARTSM001841.1E-6206263IPR001841Zinc finger, RING-type
PfamPF000971.7E-7206263IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.371206264IPR001841Zinc finger, RING-type
PROSITE patternPS005180230239IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.025293321IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.962293322IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MSIRSICKFF VNGACFKGDY CQFSHDWNDQ PNDVCTFYQN GVCSYGSRCR YEHVEVSSEY  60
TPPSTTAALA PFNSYRSWCP LCEGEIDVSN QTQKSLSACS VHQSTWRFDD EDSIPEDGNS  120
LSMSSALTAQ NQAPHPLAHL PICSFAAAGT CPYGKKCPQM HGDLCTTCGK QCLHPYRPSE  180
GGAHIKLCKR NNKRLEALKK SEEIECSVCL DRVLSKPTAA EKRFGLLPEC DHAFCITCIR  240
KWRSSSLTSS MDIDSTVKAC PICRKVSYYV IPSATWYSSK EEKQDIIDGY KAKLKSIDCR  300
YFDFGRDTCP FGSRCFYKHA YTDGRLEEPA TVAVLHFHAD NGSMEHARNI GLAYLLSRLH  360
L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3720370.0AK372037.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2145F18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570254.10.0PREDICTED: E3 ubiquitin-protein ligase makorin-like isoform X2
RefseqXP_010235894.10.0PREDICTED: E3 ubiquitin-protein ligase makorin-like isoform X2
SwissprotQ5ZA071e-158C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLW5GHW20.0W5GHW2_WHEAT; Uncharacterized protein
STRINGMLOC_75448.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53263356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-117C3H family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]